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Sample GSM1971078 Query DataSets for GSM1971078
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 2
figo stage: 1B
lymphovascular space invasion status: LVSI+
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G2_IB_POS_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 2.17538
14qI-1_st 1.11555
14qI-1_x_st 0.984581
14qI-2_st 0.780486
14qI-3_x_st 1.82208
14qI-4_st 4.23732
14qI-4_x_st 3.99739
14qI-5_st 0.787004
14qI-6_st 0.611924
14qI-7_st 3.68435
14qI-8_st 1.71997
14qI-8_x_st 1.73073
14qI-9_x_st 0.93681
14qII-10_st 1.10047
14qII-11_st 0.323198
14qII-12_st 3.51321
14qII-12_x_st 4.29505
14qII-13_st 1.26349
14qII-14_st 5.4024
14qII-14_x_st 4.08869

Total number of rows: 36353

Table truncated, full table size 859 Kbytes.

Supplementary file Size Download File type/resource
GSM1971078_15_I_sain_miRNA-4_0_.CEL.gz 779.6 Kb (ftp)(http) CEL
Processed data included within Sample table

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