GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1971076 Query DataSets for GSM1971076
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 2
figo stage: 1B
lymphovascular space invasion status: LVSI-
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G2_IB_NEG_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 2.59671
14qI-1_st 1.55314
14qI-1_x_st 1.42712
14qI-2_st 0.923501
14qI-3_x_st 2.03408
14qI-4_st 4.75754
14qI-4_x_st 4.66163
14qI-5_st 1.09637
14qI-6_st 0.741097
14qI-7_st 4.18343
14qI-8_st 2.48866
14qI-8_x_st 2.48866
14qI-9_x_st 1.86177
14qII-10_st 0.826979
14qII-11_st 1.19313
14qII-12_st 4.33328
14qII-12_x_st 4.74372
14qII-13_st 1.17614
14qII-14_st 6.02388
14qII-14_x_st 5.0489

Total number of rows: 36353

Table truncated, full table size 859 Kbytes.

Supplementary file Size Download File type/resource
GSM1971076_11_G_sain_miRNA-4_0_.CEL.gz 766.9 Kb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap