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Sample GSM1971073 Query DataSets for GSM1971073
Status Public on Jun 01, 2016
Title G1_IB_ENEG_GPOS_2
Sample type RNA
 
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 1
figo stage: 1B
lymphovascular space invasion status: LVSI-
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
 
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G1_IB_NEG_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
 
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
E-mail(s) geoffroy.canlorbe@aphp.fr
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
 
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
14q0_st 2.86699
14qI-1_st 1.43325
14qI-1_x_st 1.40699
14qI-2_st 0.541991
14qI-3_x_st 2.02174
14qI-4_st 4.7314
14qI-4_x_st 5.0647
14qI-5_st 1.29149
14qI-6_st 1.20118
14qI-7_st 4.55025
14qI-8_st 2.72896
14qI-8_x_st 2.72698
14qI-9_x_st 1.81491
14qII-10_st 1.21279
14qII-11_st 0.730516
14qII-12_st 4.85975
14qII-12_x_st 5.29851
14qII-13_st 1.12359
14qII-14_st 5.48813
14qII-14_x_st 4.53033

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.




Supplementary file Size Download File type/resource
GSM1971073_5_D_sain_miRNA-4_0_.CEL.gz 785.3 Kb (ftp)(http) CEL
Processed data included within Sample table

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