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Sample GSM1971072 Query DataSets for GSM1971072
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 1
figo stage: 1B
lymphovascular space invasion status: LVSI-
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G1_IB_NEG_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 2.8868
14qI-1_st 0.78288
14qI-1_x_st 0.775054
14qI-2_st 0.779093
14qI-3_x_st 2.40234
14qI-4_st 4.73852
14qI-4_x_st 4.48436
14qI-5_st 0.693936
14qI-6_st 1.12668
14qI-7_st 4.22866
14qI-8_st 2.67675
14qI-8_x_st 2.43887
14qI-9_x_st 1.12238
14qII-10_st 1.22067
14qII-11_st 0.51368
14qII-12_st 4.5357
14qII-12_x_st 5.0731
14qII-13_st 1.10355
14qII-14_st 5.17173
14qII-14_x_st 4.53461

Total number of rows: 36353

Table truncated, full table size 860 Kbytes.

Supplementary file Size Download File type/resource
GSM1971072_3_C_sain_miRNA-4_0_.CEL.gz 812.2 Kb (ftp)(http) CEL
Processed data included within Sample table

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