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Sample GSM1971071 Query DataSets for GSM1971071
Status Public on Jun 01, 2016
Sample type RNA
Source name Endometrium cancer, FPPE section
Organism Homo sapiens
Characteristics disease state: Endometrium cancer
grade: 1
figo stage: 1A
lymphovascular space invasion status: LVSI-
lymph node status: Nodal +
sample origin: FPPE section
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using the miRNeasy FFPE Kit (Qiagen, Courtaboeuf, France), according to the manufacturer's instructions.
Label biotin
Label protocol After validation of the RNA quality with Bioanalyzer 2100, 1 µg of total RNA was biotin labelled following the FlashTag Biotin HSR RNA labelling kit (Affymetrix).
Hybridization protocol Following fragmentation, mirRNA targets were hybridized for 20 hr at 48C on mirRNA-40 Affymetrix. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the GCS 3000 scanner (Affymetrix)
Description G1_IA_NEG_POS
Data processing The data were preprocessed and analyzing using Partek Genomic Suite.
Submission date Dec 14, 2015
Last update date Jun 01, 2016
Contact name Geoffroy - CANLORBE
Phone +33 1 56 01 60 19
Organization name Tenon University Hospital, Assistance Publique des Hôpitaux de Paris (AP-HP), University Pierre and Marie Curie, Paris 6
Department Department of Obstetrics and Gynaecology
Lab -
Street address 4, rue de la Chine
City Paris
State/province -
ZIP/Postal code 75020
Country France
Platform ID GPL19117
Series (1)
GSE75968 microRNA expression profile related to lymph node status in women with stage grade 1-2-3 endometrial cancer

Data table header descriptions
VALUE RMA signal

Data table
14q0_st 3.72334
14qI-1_st 2.48045
14qI-1_x_st 2.12969
14qI-2_st 0.849013
14qI-3_x_st 2.30994
14qI-4_st 5.44655
14qI-4_x_st 5.48657
14qI-5_st 1.00568
14qI-6_st 1.49468
14qI-7_st 4.48157
14qI-8_st 3.03477
14qI-8_x_st 3.03477
14qI-9_x_st 1.48079
14qII-10_st 1.15313
14qII-11_st 1.76661
14qII-12_st 5.0905
14qII-12_x_st 5.50466
14qII-13_st 0.997247
14qII-14_st 5.72444
14qII-14_x_st 4.33815

Total number of rows: 36353

Table truncated, full table size 858 Kbytes.

Supplementary file Size Download File type/resource
GSM1971071_1_B_sain_miRNA-4_0_.CEL.gz 756.1 Kb (ftp)(http) CEL
Processed data included within Sample table

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