|
| Status |
Public on Jun 01, 2016 |
| Title |
Lockd promoter Capture, Rep 1 |
| Sample type |
SRA |
| |
|
| Source name |
G1E mouse cell line
|
| Organism |
Mus musculus |
| Characteristics |
cell line: G1E
targeted promoter: Lockd
|
| Growth protocol |
G1E cells were grown in regular culture media as published
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
see Davies et al, Nat Methods 2015, doi:10.1038/nmeth.3664
see Davies et al, Nat Methods 2015, doi:10.1038/nmeth.3664
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
Capture-C sequencing dataset obtained by Capture of restriction fragment corresponding to Cdkn1b promoter
|
| Data processing |
Library strategy: Capture-C
see Davies et al, Nat Methods 2015, doi:10.1038/nmeth.3664
Genome_build: Mouse mm9
Supplementary_files_format_and_content: bedgraph files - contain Capture-C tracks
|
| |
|
| Submission date |
Dec 10, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Vikram Paralkar |
| E-mail(s) |
vikram.paralkar@uphs.upenn.edu
|
| Phone |
215-590-0558
|
| Organization name |
University of Pennsylvania
|
| Street address |
3400 Civic Center Boulevard, Perelman Center, 7th Floor, South Pavilion Extension
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE75880 |
Unlinking a lncRNA from its associated cis element [Capture-C] |
| GSE75881 |
Unlinking a lncRNA from its associated cis element |
|
| Relations |
| BioSample |
SAMN04329932 |
| SRA |
SRX1473619 |
