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Sample GSM1946425 Query DataSets for GSM1946425
Status Public on Feb 20, 2016
Title OIM_4hr_2
Sample type RNA
 
Source name hFOB
Organism Homo sapiens
Characteristics cell line: hFOB
treatment: OIM treated, grow at 39oC
Treatment protocol BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule total RNA
Extraction protocol none provided by submitter
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description OIM_4hr_2
Data processing Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
 
Submission date Nov 20, 2015
Last update date Feb 20, 2016
Contact name Songjoon Baek
Organization name NCI / NIH
Department CCR
Lab LRBGE
Street address 41 Library Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL570
Series (2)
GSE75230 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 457.271 P 5.16732e-05
AFFX-BioB-M_at 686.187 P 4.42873e-05
AFFX-BioB-3_at 442.803 P 4.42873e-05
AFFX-BioC-5_at 1108.69 P 5.16732e-05
AFFX-BioC-3_at 2021.23 P 4.42873e-05
AFFX-BioDn-5_at 3098.07 P 4.42873e-05
AFFX-BioDn-3_at 4664.7 P 5.16732e-05
AFFX-CreX-5_at 14532.1 P 5.16732e-05
AFFX-CreX-3_at 14665.1 P 4.42873e-05
AFFX-DapX-5_at 119.612 P 7.00668e-05
AFFX-DapX-M_at 425.322 P 0.000581214
AFFX-DapX-3_at 737.869 P 4.42873e-05
AFFX-LysX-5_at 57.5742 P 0.0020226
AFFX-LysX-M_at 44.0003 P 0.0125468
AFFX-LysX-3_at 84.2292 P 0.00010954
AFFX-PheX-5_at 46.6507 P 0.000224668
AFFX-PheX-M_at 75.3555 P 0.000581214
AFFX-PheX-3_at 74.576 P 4.42873e-05
AFFX-ThrX-5_at 28.3792 P 0.0113844
AFFX-ThrX-M_at 64.7724 P 0.00110197

Total number of rows: 54675

Table truncated, full table size 1638 Kbytes.




Supplementary file Size Download File type/resource
GSM1946425_OIM_4hr_2.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM1946425_OIM_4hr_2.mas5.CHP.gz 489.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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