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Status
Public on Feb 20, 2016
Title
OIM_4hr_2
Sample type
RNA
Source name
hFOB
Organism
Homo sapiens
Characteristics
cell line: hFOB treatment: OIM treated, grow at 39oC
Treatment protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule
total RNA
Extraction protocol
none provided by submitter
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
OIM_4hr_2
Data processing
Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
Submission date
Nov 20, 2015
Last update date
Feb 20, 2016
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (2)
GSE75230
Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232
Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
457.271
P
5.16732e-05
AFFX-BioB-M_at
686.187
P
4.42873e-05
AFFX-BioB-3_at
442.803
P
4.42873e-05
AFFX-BioC-5_at
1108.69
P
5.16732e-05
AFFX-BioC-3_at
2021.23
P
4.42873e-05
AFFX-BioDn-5_at
3098.07
P
4.42873e-05
AFFX-BioDn-3_at
4664.7
P
5.16732e-05
AFFX-CreX-5_at
14532.1
P
5.16732e-05
AFFX-CreX-3_at
14665.1
P
4.42873e-05
AFFX-DapX-5_at
119.612
P
7.00668e-05
AFFX-DapX-M_at
425.322
P
0.000581214
AFFX-DapX-3_at
737.869
P
4.42873e-05
AFFX-LysX-5_at
57.5742
P
0.0020226
AFFX-LysX-M_at
44.0003
P
0.0125468
AFFX-LysX-3_at
84.2292
P
0.00010954
AFFX-PheX-5_at
46.6507
P
0.000224668
AFFX-PheX-M_at
75.3555
P
0.000581214
AFFX-PheX-3_at
74.576
P
4.42873e-05
AFFX-ThrX-5_at
28.3792
P
0.0113844
AFFX-ThrX-M_at
64.7724
P
0.00110197
Total number of rows: 54675 Table truncated, full table size 1638 Kbytes .Supplementary file
Size
Download
File type/resource
GSM1946425_OIM_4hr_2.CEL.gz
4.5 Mb
(ftp) (http)
CEL
GSM1946425_OIM_4hr_2.mas5.CHP.gz
489.6 Kb
(ftp) (http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file