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Status
Public on Feb 20, 2016
Title
B39_48hr_3
Sample type
RNA
Source name
hFOB
Organism
Homo sapiens
Characteristics
cell line: hFOB treatment: untreated, grow at 39oC in BM
Treatment protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule
total RNA
Extraction protocol
none provided by submitter
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
B39_48hr_3
Data processing
Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
Submission date
Nov 20, 2015
Last update date
Feb 20, 2016
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (2)
GSE75230
Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232
Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
456.925
P
5.16732e-05
AFFX-BioB-M_at
677.31
P
4.42873e-05
AFFX-BioB-3_at
394.662
P
4.42873e-05
AFFX-BioC-5_at
1017.41
P
5.16732e-05
AFFX-BioC-3_at
1770.73
P
4.42873e-05
AFFX-BioDn-5_at
2817.7
P
4.42873e-05
AFFX-BioDn-3_at
4247.44
P
5.16732e-05
AFFX-CreX-5_at
12670.7
P
5.16732e-05
AFFX-CreX-3_at
13019.1
P
4.42873e-05
AFFX-DapX-5_at
115.573
P
6.02111e-05
AFFX-DapX-M_at
415.538
P
0.000581214
AFFX-DapX-3_at
724.323
P
4.42873e-05
AFFX-LysX-5_at
51.9903
P
0.000856509
AFFX-LysX-M_at
58.5496
P
0.00933744
AFFX-LysX-3_at
92.3171
P
7.00668e-05
AFFX-PheX-5_at
57.6211
P
4.42246e-05
AFFX-PheX-M_at
94.2987
P
0.000258067
AFFX-PheX-3_at
86.7167
P
5.16732e-05
AFFX-ThrX-5_at
22.8422
P
0.0151826
AFFX-ThrX-M_at
61.5887
P
0.000340305
Total number of rows: 54675 Table truncated, full table size 1640 Kbytes .Supplementary file
Size
Download
File type/resource
GSM1946423_B39_48hr_3.CEL.gz
4.5 Mb
(ftp) (http)
CEL
GSM1946423_B39_48hr_3.mas5.CHP.gz
488.2 Kb
(ftp) (http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file