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Sample GSM1946423 Query DataSets for GSM1946423
Status Public on Feb 20, 2016
Title B39_48hr_3
Sample type RNA
 
Source name hFOB
Organism Homo sapiens
Characteristics cell line: hFOB
treatment: untreated, grow at 39oC in BM
Treatment protocol BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule total RNA
Extraction protocol none provided by submitter
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description B39_48hr_3
Data processing Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
 
Submission date Nov 20, 2015
Last update date Feb 20, 2016
Contact name Songjoon Baek
Organization name NCI / NIH
Department CCR
Lab LRBGE
Street address 41 Library Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL570
Series (2)
GSE75230 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232 Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 456.925 P 5.16732e-05
AFFX-BioB-M_at 677.31 P 4.42873e-05
AFFX-BioB-3_at 394.662 P 4.42873e-05
AFFX-BioC-5_at 1017.41 P 5.16732e-05
AFFX-BioC-3_at 1770.73 P 4.42873e-05
AFFX-BioDn-5_at 2817.7 P 4.42873e-05
AFFX-BioDn-3_at 4247.44 P 5.16732e-05
AFFX-CreX-5_at 12670.7 P 5.16732e-05
AFFX-CreX-3_at 13019.1 P 4.42873e-05
AFFX-DapX-5_at 115.573 P 6.02111e-05
AFFX-DapX-M_at 415.538 P 0.000581214
AFFX-DapX-3_at 724.323 P 4.42873e-05
AFFX-LysX-5_at 51.9903 P 0.000856509
AFFX-LysX-M_at 58.5496 P 0.00933744
AFFX-LysX-3_at 92.3171 P 7.00668e-05
AFFX-PheX-5_at 57.6211 P 4.42246e-05
AFFX-PheX-M_at 94.2987 P 0.000258067
AFFX-PheX-3_at 86.7167 P 5.16732e-05
AFFX-ThrX-5_at 22.8422 P 0.0151826
AFFX-ThrX-M_at 61.5887 P 0.000340305

Total number of rows: 54675

Table truncated, full table size 1640 Kbytes.




Supplementary file Size Download File type/resource
GSM1946423_B39_48hr_3.CEL.gz 4.5 Mb (ftp)(http) CEL
GSM1946423_B39_48hr_3.mas5.CHP.gz 488.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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