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Status
Public on Feb 20, 2016
Title
B39_4hr_1
Sample type
RNA
Source name
hFOB
Organism
Homo sapiens
Characteristics
cell line: hFOB treatment: untreated, grow at 34oC in BM
Treatment protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Growth protocol
BM, basal madia: DMEM supplemented 10% calf serum, 2mM L-glutamine, 1mM sodium pyruvate, 1X non-essential amino acids, and 1% penicillin-streptomycin
Extracted molecule
total RNA
Extraction protocol
none provided by submitter
Label
biotin
Label protocol
standard Affymetrix protocol
Hybridization protocol
standard Affymetrix protocol
Scan protocol
standard Affymetrix protocol
Description
B39_4hr_1
Data processing
Affymetrix human Genome U133 2.0 array data in CEL files were preprocessed using Affymetrix Expression Console software with mas5 and its quantile normalization method. Mean expression values from biological duplicates were calculated.
Submission date
Nov 20, 2015
Last update date
Feb 20, 2016
Contact name
Songjoon Baek
Organization name
NCI / NIH
Department
CCR
Lab
LRBGE
Street address
41 Library Drive
City
Bethesda
State/province
MD
ZIP/Postal code
20892
Country
USA
Platform ID
GPL570
Series (2)
GSE75230
Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation (microarray)
GSE75232
Genome-Wide Chromatin Landscape Transitions Identify Novel Pathways in Early Commitment to Osteoblast Differentiation
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
448.522
P
5.16732e-05
AFFX-BioB-M_at
660.431
P
4.42873e-05
AFFX-BioB-3_at
400.487
P
4.42873e-05
AFFX-BioC-5_at
1080.24
P
5.16732e-05
AFFX-BioC-3_at
1838.27
P
4.42873e-05
AFFX-BioDn-5_at
2868.57
P
4.42873e-05
AFFX-BioDn-3_at
4341.73
P
4.42873e-05
AFFX-CreX-5_at
12624.3
P
5.16732e-05
AFFX-CreX-3_at
13030.2
P
4.42873e-05
AFFX-DapX-5_at
147.598
P
8.14279e-05
AFFX-DapX-M_at
591.201
P
0.000146581
AFFX-DapX-3_at
1053.35
P
4.42873e-05
AFFX-LysX-5_at
78.781
P
0.000169025
AFFX-LysX-M_at
75.104
P
0.00110197
AFFX-LysX-3_at
162.172
P
4.42873e-05
AFFX-PheX-5_at
75.243
P
8.14279e-05
AFFX-PheX-M_at
91.7065
P
8.14279e-05
AFFX-PheX-3_at
129.749
P
7.00668e-05
AFFX-ThrX-5_at
32.7769
P
0.0012475
AFFX-ThrX-M_at
91.4914
P
0.000224668
Total number of rows: 54675 Table truncated, full table size 1638 Kbytes .Supplementary file
Size
Download
File type/resource
GSM1946415_B39_4hr_1.CEL.gz
4.5 Mb
(ftp) (http)
CEL
GSM1946415_B39_4hr_1.mas5.CHP.gz
489.9 Kb
(ftp) (http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file