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Sample GSM194192 Query DataSets for GSM194192
Status Public on May 26, 2009
Title HighSES 3
Sample type RNA
 
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: High socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
 
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
 
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
 
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
ID_REF
VALUE Log2 metric RMA expression estimate.

Data table
ID_REF VALUE
205048_s_at 3.138915
202917_s_at 7.531452
221728_x_at 9.294215
220784_s_at 4.154885
209480_at 7.857534
214146_s_at 5.064233
214218_s_at 8.631837
209116_x_at 7.732508
200782_at 8.080761
201743_at 5.552333
211696_x_at 8.501176
202912_at 7.420714
214414_x_at 8.909486
202651_at 5.911157
217941_s_at 8.537100
206390_x_at 6.848099
202503_s_at 6.654172
202602_s_at 6.663668
215223_s_at 7.264097
217022_s_at 4.962456

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.




Supplementary file Size Download File type/resource
GSM194192.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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