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Sample GSM194187 Query DataSets for GSM194187
Status Public on May 26, 2009
Title LowSES 14
Sample type RNA
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
VALUE Log2 metric RMA expression estimate.

Data table
205048_s_at 5.805482
202917_s_at 7.140156
221728_x_at 4.254719
220784_s_at 4.130465
209480_at 7.305126
214146_s_at 6.674880
214218_s_at 3.809828
209116_x_at 6.941242
200782_at 8.569867
201743_at 5.139602
211696_x_at 7.503217
202912_at 6.862170
214414_x_at 7.439664
202651_at 6.444068
217941_s_at 9.258471
206390_x_at 7.195795
202503_s_at 8.524760
202602_s_at 7.839829
215223_s_at 6.951861
217022_s_at 4.700117

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.

Supplementary file Size Download File type/resource
GSM194187.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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