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Sample GSM194185 Query DataSets for GSM194185
Status Public on May 26, 2009
Title LowSES 12
Sample type RNA
 
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
 
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
 
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
 
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
ID_REF
VALUE Log2 metric RMA expression estimate.

Data table
ID_REF VALUE
205048_s_at 3.310934
202917_s_at 7.960801
221728_x_at 4.476085
220784_s_at 3.918240
209480_at 4.271256
214146_s_at 5.102535
214218_s_at 3.647080
209116_x_at 8.133505
200782_at 8.697264
201743_at 5.593358
211696_x_at 8.508319
202912_at 7.544377
214414_x_at 9.051834
202651_at 6.318606
217941_s_at 8.237684
206390_x_at 6.160105
202503_s_at 8.544530
202602_s_at 6.699951
215223_s_at 7.001498
217022_s_at 8.667634

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.




Supplementary file Size Download File type/resource
GSM194185.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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