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Sample GSM194180 Query DataSets for GSM194180
Status Public on May 26, 2009
Title LowSES 7
Sample type RNA
 
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
 
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
 
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
 
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
ID_REF
VALUE Log2 metric RMA expression estimate.

Data table
ID_REF VALUE
205048_s_at 3.350481
202917_s_at 9.002603
221728_x_at 8.790156
220784_s_at 3.887987
209480_at 4.655652
214146_s_at 5.826394
214218_s_at 7.860040
209116_x_at 8.031615
200782_at 8.314832
201743_at 6.431470
211696_x_at 8.324022
202912_at 7.712622
214414_x_at 8.985918
202651_at 6.119630
217941_s_at 8.557273
206390_x_at 7.016537
202503_s_at 6.978058
202602_s_at 7.062028
215223_s_at 7.290449
217022_s_at 4.749298

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.




Supplementary file Size Download File type/resource
GSM194180.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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