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Sample GSM194177 Query DataSets for GSM194177
Status Public on May 26, 2009
Title LowSES 4
Sample type RNA
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
VALUE Log2 metric RMA expression estimate.

Data table
205048_s_at 4.997302
202917_s_at 10.712740
221728_x_at 4.396478
220784_s_at 5.830591
209480_at 4.159894
214146_s_at 7.846148
214218_s_at 3.801061
209116_x_at 6.442715
200782_at 7.334862
201743_at 9.482858
211696_x_at 7.208280
202912_at 10.256275
214414_x_at 7.350815
202651_at 5.750070
217941_s_at 7.355433
206390_x_at 9.052368
202503_s_at 7.037011
202602_s_at 6.229708
215223_s_at 10.606703
217022_s_at 5.758919

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.

Supplementary file Size Download File type/resource
GSM194177.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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