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Sample GSM194176 Query DataSets for GSM194176
Status Public on May 26, 2009
Title LowSES 3
Sample type RNA
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
VALUE Log2 metric RMA expression estimate.

Data table
205048_s_at 5.912742
202917_s_at 6.516893
221728_x_at 4.394111
220784_s_at 3.974214
209480_at 7.670682
214146_s_at 6.287030
214218_s_at 3.898933
209116_x_at 7.543394
200782_at 7.261787
201743_at 5.553270
211696_x_at 8.186896
202912_at 7.011090
214414_x_at 8.825895
202651_at 5.644864
217941_s_at 7.492640
206390_x_at 7.531551
202503_s_at 8.178779
202602_s_at 6.210169
215223_s_at 6.736432
217022_s_at 4.782511

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.

Supplementary file Size Download File type/resource
GSM194176.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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