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Sample GSM194174 Query DataSets for GSM194174
Status Public on May 26, 2009
Title LowSES 1
Sample type RNA
 
Source name Peripheral blood CD2+ leukocytes
Organism Homo sapiens
Characteristics other: Low socioeconomic status (SES)
Extracted molecule total RNA
Extraction protocol Peripheral blood leukocytes were isolated from fresh whole blood by ficol density gradient, CD2+ cells were isolated by MACS immunomagnetic positive selection, and total RNA was extracted using Qiagen RNEasy.
Label biotin
Label protocol Standard Affymetrix probe synthesis for gene expression profiling (carried out in UCLA DNA Microarray Core).
 
Hybridization protocol Standard Affymetrix hybridization protocol for gen expression profiling (carried out in UCLA DNA Microarray Core).
Scan protocol Standard Affymetrixscan protocol for gene expression profiling (carried out in UCLA DNA Microarray Core).
Description Affymetrix U133A
Data processing RMA (RMAExpress) processing of Affymetrix .CEL files generated by UCLA DNA Microarray Core.
 
Submission date May 24, 2007
Last update date Mar 29, 2010
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
 
Platform ID GPL96
Series (1)
GSE7894 Differential gene expression in peripheral blood CD2+ leukocytes from PATH particpants

Data table header descriptions
ID_REF
VALUE Log2 metric RMA expression estimate.

Data table
ID_REF VALUE
205048_s_at 5.364897
202917_s_at 8.855080
221728_x_at 4.104338
220784_s_at 5.562824
209480_at 6.840436
214146_s_at 7.013909
214218_s_at 3.857485
209116_x_at 10.029474
200782_at 8.784560
201743_at 5.937869
211696_x_at 10.436062
202912_at 8.749424
214414_x_at 11.258801
202651_at 6.806241
217941_s_at 8.796105
206390_x_at 8.067031
202503_s_at 8.273402
202602_s_at 7.610501
215223_s_at 8.666680
217022_s_at 4.408679

Total number of rows: 22283

Table truncated, full table size 434 Kbytes.




Supplementary file Size Download File type/resource
GSM194174.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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