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Sample GSM1939033 Query DataSets for GSM1939033
Status Public on Feb 22, 2016
Title DND41 shControl_1
Sample type RNA
Source name DND41_shControl
Organism Homo sapiens
Characteristics cell line: DND41
Treatment protocol Cells were infected with shKDM2B and RNA harvested after 6 days
Growth protocol Human leukemia cell lines were maintained in IMDM supplemented with 10% FBS
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
Hybridization protocol Hybridization was performed using a GeneChip Hybridization Oven 640 overnight at 45°C. Microarray washing and staining was done using a GeneChip Fluidics Station 450
Scan protocol GeneChip Scanner 3000 7G (Affymetrix)
Data processing Probe level analysis including background subtraction and quantile normalization took placed with the Robust Multi Array Average Algorithm (RMA) using the Affymetrix Expression Console Software 1.3
Submission date Nov 12, 2015
Last update date Feb 22, 2016
Contact name Alexandros Tzatsos
Phone 2029949104
Organization name George Washington University
Department GW Cancer Center
Lab Cancer Epigenetics Laboratory
Street address 800 22nd St NW SEH 8850
City Washington
State/province DC
ZIP/Postal code 20052
Country USA
Platform ID GPL15207
Series (2)
GSE70729 Role of the histone demethylase KDM2B in hematopoietic homeostasis and malignancies
GSE74959 Role of the histone demethylase KDM2B in hematopoietic homeostasis and malignancies [human cell line gene expression]

Data table header descriptions

Data table
AFFX-BioB-5_at 8.37501
AFFX-BioB-M_at 8.43906
AFFX-BioB-3_at 8.17036
AFFX-BioC-5_at 9.76415
AFFX-BioC-3_at 10.0827
AFFX-BioDn-5_at 11.0784
AFFX-BioDn-3_at 12.3187
AFFX-CreX-5_at 13.3239
AFFX-CreX-3_at 13.6991
AFFX-DapX-5_at 6.8006
AFFX-DapX-M_at 7.73391
AFFX-DapX-3_at 8.63072
AFFX-LysX-5_at 3.82294
AFFX-LysX-M_at 5.35298
AFFX-LysX-3_at 6.04658
AFFX-PheX-5_at 4.91606
AFFX-PheX-M_at 5.17016
AFFX-PheX-3_at 6.35205
AFFX-ThrX-5_at 5.1253
AFFX-ThrX-M_at 5.54394

Total number of rows: 49395

Table truncated, full table size 1033 Kbytes.

Supplementary file Size Download File type/resource
GSM1939033_DND41_shControl_1.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM1939033_DND41_shControl_1.rma.chp.gz 346.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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