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Sample GSM1938960 Query DataSets for GSM1938960
Status Public on Mar 16, 2016
Title pES12 d-G1
Sample type genomic
Source name Diploid pES12 cells in G1 (2c)
Organism Homo sapiens
Characteristics cell line: d-pES12
passage: 18
differentiation status: Undifferentiated
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated using the NucleoSpin Tissue Kit (MACHEREY-NAGEL)
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
Hybridization protocol Standard Illumina protocol
Scan protocol BeadChips were scanned with Illumina's iScan System
Description 101070480024_R08C01
Data processing IDAT files were processed using Genome Studio Genotyping Module (Illumina)
GC Score, B Allele Frequency and Log R Ratio values obtained from Genome Studio Genotyping Module (Illumina)
Submission date Nov 12, 2015
Last update date Mar 16, 2016
Contact name Ido Sagi
Organization name The Hebrew University of Jerusalem
Department Genetics
Lab Nissim Benvenisty Lab, The Azrieli Center for Stem Cells and Genetic Research
Street address Givat Ram
City Jerusalem
ZIP/Postal code 91904
Country Israel
Platform ID GPL21135
Series (2)
GSE71458 Derivation and differentiation of haploid human embryonic stem cells
GSE74950 Derivation and differentiation of haploid human embryonic stem cells [SNP array]

Data table header descriptions
VALUE Log R Ratio

Data table
200610-1 -0.0721
200610-10 -0.1116
200610-100 0.0257
200610-102 0.1789
200610-105 0.083
200610-107 -0.5077
200610-108 -0.0164
200610-109 0.0608
200610-110 0.0647
200610-111 -0.0018
200610-112 0.1169
200610-113 0.2074
200610-114 0.0716
200610-115 0.0572
200610-116 -0.3025
200610-117 0.166
200610-118 0.1343
200610-119 0.3027
200610-12 0.0148
200610-120 0.0336

Total number of rows: 2583651

Table truncated, full table size 46581 Kbytes.

Supplementary file Size Download File type/resource
GSM1938960_101070480024_R08C01_Grn.idat.gz 17.6 Mb (ftp)(http) IDAT
GSM1938960_101070480024_R08C01_Red.idat.gz 17.8 Mb (ftp)(http) IDAT
Processed data included within Sample table
Processed data are available on Series record

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