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Sample GSM1906998 Query DataSets for GSM1906998
Status Public on Oct 14, 2015
Title 142823
Sample type genomic
 
Channel 1
Source name RCC
Organism Homo sapiens
Characteristics sample type: RCC ,TFE
tissue: RCC
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh, frozen or formol fixed-paraffin embedded fragments using Qiamp DNA mini kit.
Label Cy5
Label protocol DNA was labeled with the sureTag labeling kit accirding the agilent protocol
 
Channel 2
Source name Female DNA control provided in SureTag Labeling Kit
Organism Homo sapiens
Characteristics sample type: commercial DNA from cell lines
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from fresh, frozen or formol fixed-paraffin embedded fragments using Qiamp DNA mini kit.
Label Cy3
Label protocol DNA was labeled with the sureTag labeling kit accirding the agilent protocol
 
 
Hybridization protocol DNA was hybridized with the hybridization kit according the Agilent protocol
Scan protocol We used a Surescan provided by Agilent and controled by SureScan Software
Data processing the data was processed on Cytogenomics 2.9.1.3 using the Default Analysis Method - CGH v2 proposed by Agilent
 
Submission date Oct 13, 2015
Last update date Oct 14, 2015
Contact name annie peyron
E-mail(s) acpeyron@unice.fr
Organization name CHU Nice
Lab LGTS
Street address 28 av Valombrose
City Nice
ZIP/Postal code 06107
Country France
 
Platform ID GPL10123
Series (1)
GSE73979 3 cases of renal cell carcinomas with TFEB amplification

Data table header descriptions
ID_REF
VALUE Cytogenomics let observe a log2 Ratio (Cy5/Cy3) value

Data table
ID_REF VALUE
1 9.440459853e-002
2 0.000000000e+000
3 0.000000000e+000
4 0.000000000e+000
5 0.000000000e+000
6 0.000000000e+000
7 0.000000000e+000
8 0.000000000e+000
9 0.000000000e+000
10 0.000000000e+000
11 0.000000000e+000
12 0.000000000e+000
13 0.000000000e+000
14 0.000000000e+000
15 0.000000000e+000
16 0.000000000e+000
17 0.000000000e+000
18 0.000000000e+000
19 0.000000000e+000
20 0.000000000e+000

Total number of rows: 180880

Table truncated, full table size 4219 Kbytes.




Supplementary file Size Download File type/resource
GSM1906998_142823.txt.gz 18.7 Mb (ftp)(http) TXT
Processed data included within Sample table

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