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Sample GSM1899941 Query DataSets for GSM1899941
Status Public on Sep 01, 2016
Title SPECS_1939
Sample type genomic
Source name SPECS_1939
Organism Homo sapiens
Characteristics tissue: tumor
cell type: ABC DLBCL cells
disease state: activated B cell-like (ABC) subtype of diffuse large B cell lymphoma (DLBCL)
individual: SPECS_1939
Extracted molecule genomic DNA
Extraction protocol QIAGEN AllPrep DNA/RNA Mini Protocol
Other: Genomic DNA was isolated using QIAGEN AllPrep DNA/RNA Mini Kit.
Label biotin
Label protocol Affymetrix Labeling Protocol
Other: Fragmented PCR products were terminally labeled with biotin according to the manufacturer's protocol.
Hybridization protocol Affymetrix Hybridization Protocol
Other: Fragmented single-stranded sense DNA were hybridized to the Affymetrix Genome-Wide Human SNP 6.0 array. Arrays were hybridized in the GeneChip Hybridization Oven 645 and stained in the GeneChip Fluidics Station 450.
Scan protocol Scanning Protocol
Other: Arrays were scanned on a GeneChip Scanner 3000-7G (Affymetrix).
Description No additional information.
Data processing Data Processing Protocol
Calculation Method: The Affy SNP datsets were normalized and signal called by Affy GTC (version using CNV analysis with the default parameters.
Submission date Sep 30, 2015
Last update date Sep 01, 2016
Contact name Louis M. Staudt
Phone 301-402-1892
Organization name National Cancer Institute
Department Lymphoid Malignancies Branch
Lab Louis M Staudt
Street address 9000 Rockville Pike, Bldg 10, Rm 4N114
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL6801
Series (1)
GSE73639 Targeting Non-proteolytic Protein Ubiquitination for the Treatment of Diffuse Large B Cell Lymphoma (Affy SNP6.0 Arrays)

Data table header descriptions
ID_REF Affymetrix ID
VALUE Log2Ratio

Data table
CN_473963 -0.006
CN_473964 -0.175
CN_473965 -0.246
CN_473981 -0.398
CN_473982 -0.538
CN_497981 -0.188
CN_502615 0.149
CN_502613 -0.089
CN_502614 0.185
CN_502616 0.136
CN_502843 -0.190
CN_466171 -0.230
CN_468414 0.243
CN_468412 0.510
CN_468413 -0.335
CN_470565 -0.398
CN_468424 -0.007
CN_468425 -0.084
CN_460512 -0.439
CN_460513 -0.616

Total number of rows: 908043

Table truncated, full table size 14970 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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