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Sample GSM1899940 Query DataSets for GSM1899940
Status Public on Sep 01, 2016
Title YM
Sample type genomic
Source name YM cell line
Organism Homo sapiens
Characteristics cell line: YM
cell type: ABC DLBCL cells
disease state: activated B cell-like (ABC) subtype of diffuse large B cell lymphoma (DLBCL)
Extracted molecule genomic DNA
Extraction protocol QIAGEN AllPrep DNA/RNA Mini Protocol
Other: Genomic DNA was isolated using QIAGEN AllPrep DNA/RNA Mini Kit.
Label biotin
Label protocol Affymetrix Labeling Protocol
Other: Fragmented PCR products were terminally labeled with biotin according to the manufacturer's protocol.
Hybridization protocol Affymetrix Hybridization Protocol
Other: Fragmented single-stranded sense DNA were hybridized to the Affymetrix Genome-Wide Human SNP 6.0 array. Arrays were hybridized in the GeneChip Hybridization Oven 645 and stained in the GeneChip Fluidics Station 450.
Scan protocol Scanning Protocol
Other: Arrays were scanned on a GeneChip Scanner 3000-7G (Affymetrix).
Description No additional information.
Data processing Data Processing Protocol
Calculation Method: The Affy SNP datsets were normalized and signal called by Affy GTC (version using CNV analysis with the default parameters.
Submission date Sep 30, 2015
Last update date Sep 01, 2016
Contact name Louis M. Staudt
Phone 301-402-1892
Organization name National Cancer Institute
Department Lymphoid Malignancies Branch
Lab Louis M Staudt
Street address 9000 Rockville Pike, Bldg 10, Rm 4N114
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL6801
Series (1)
GSE73639 Targeting Non-proteolytic Protein Ubiquitination for the Treatment of Diffuse Large B Cell Lymphoma (Affy SNP6.0 Arrays)

Data table header descriptions
ID_REF Affymetrix ID
VALUE Log2Ratio

Data table
CN_473963 -0.281
CN_473964 -0.000
CN_473965 -0.199
CN_473981 0.071
CN_473982 -0.147
CN_497981 0.032
CN_502615 -0.094
CN_502613 0.508
CN_502614 -0.036
CN_502616 -0.261
CN_502843 0.351
CN_466171 0.165
CN_468414 0.608
CN_468412 -0.575
CN_468413 -0.064
CN_470565 -0.558
CN_468424 -0.164
CN_468425 0.178
CN_460512 0.974
CN_460513 0.840

Total number of rows: 908043

Table truncated, full table size 14953 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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