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Sample GSM1873492 Query DataSets for GSM1873492
Status Public on Nov 25, 2015
Title CMP_CD41_M
Sample type SRA
Source name CMP CD41
Organism Mus musculus
Characteristics strain: C57BL/6
age: 6-8 wks
tissue: bone marrow
cell type: common myeloid progenitor (CMP)
cell subtype: CMP CD41
chip antibody: K4me2 (Abcam-ab7766)
Treatment protocol no treatment
Growth protocol 6 to 8 weeks-old mice housed at the Weizmann Institute animal facility
Extracted molecule genomic DNA
Extraction protocol Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.
Lara-Astiaso D, Weiner A, Lorenzo-Vivas E, Zaretsky I et al. Immunogenetics. Chromatin state dynamics during blood formation. Science 2014 Aug 22;345(6199):943-9. PMID: 25103404
indexing-first chromatin immunoprecipitation
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina NextSeq 500
Data processing bcl2fastq/
alignment using bowtiebowtie2/2.1.0 using default parameters
Genome_build: mm9
Supplementary_files_format_and_content: bigWig
Submission date Sep 09, 2015
Last update date May 15, 2019
Contact name Ido Amit
Phone 972-8-9343338
Organization name Weizmann Institute of Science
Department Immunology
Street address 234 Herzl st.
City Rehovot
ZIP/Postal code 760001
Country Israel
Platform ID GPL19057
Series (2)
GSE72858 Transcriptional heterogeneity and lineage commitment in myeloid progenitors [ChIP-seq]
GSE72859 Transcriptional heterogeneity and lineage commitment in myeloid progenitors
BioSample SAMN04044122
SRA SRX1213159

Supplementary file Size Download File type/resource
GSM1873492_merged_K4ME2_CMP_CD41_M.bigWig 106.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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