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Sample GSM1866601 Query DataSets for GSM1866601
Status Public on Aug 09, 2016
Title scrambled_rep2 (miR-320c control)
Sample type RNA
Source name primary fibroblast
Organism Homo sapiens
Characteristics cell type: primary fibroblast
treatment: Cells transfected with scramble miRNA as control
Treatment protocol Primary fibroblast were transfected with scrambled, miR-211 or miR-320c mimic
Growth protocol Primary human dermal fibroblasts were isolated from neonatal foreskins (see methods), plated onto collagen dishes and cultured in DMEM supplemented with 10% FBS, 1% penicillin-streptomycin, and 1% L-glutamine.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol WT terminal labeling and controls kit (Affymetrix, cat# 901524) according to the manufacturer's instructions.
Hybridization protocol GeneAtlas Hybridization, Wash and Stain kit for WT array strips (Affymetrix, cat# 901667) was used according to the manufacturer's instructions. Hybridization instrument Accublock Digital Dry Bath (LabNet, D1200) this instrument is adjust for the GeneAtlas microarray.
Scan protocol Washing and scanning were performed in GeneAtlas instrument (Affymetrix, 00-0377 (washing fluidic station), 00-0376 (imagine station)).
Data processing Raw data (CEL files) was processed using the Chipster software (; normalized expression values were calculated with the RMA algorithm and default parameters
Submission date Sep 01, 2015
Last update date Aug 09, 2016
Contact name Carmit Levy
Organization name Tel Aviv University
Department Human Genetics and Biochemistry
Lab Sackler School of Medicine
Street address Ramat Aviv
City Tel Aviv
ZIP/Postal code 69978
Country Israel
Platform ID GPL20880
Series (2)
GSE72619 Expression profiling of fibroblasts treated with miR-211 and miR-320c
GSE72620 Melanoma miRNA trafficking triggers the tumor primary niche formation
Reanalysis of GSM1866597

Data table header descriptions
VALUE Log2-transformed RMA

Data table
100009676_at 4.63
10000_at 7.6
10001_at 7.45
10002_at 3.9
100033413_at 4.23
100033414_at 5.13
100033416_at 4.47
100033418_at 4.87
100033420_at 6.28
100033422_at 2.6
100033423_at 3.02
100033424_at 2.58
100033425_at 2.57
100033426_at 7.99
100033427_at 9.9
100033428_at 2.25
100033430_at 2.6
100033431_at 6.81
100033432_at 4.47
100033433_at 2.81

Total number of rows: 19654

Table truncated, full table size 265 Kbytes.

Supplementary file Size Download File type/resource 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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