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Sample GSM1835027 Query DataSets for GSM1835027
Status Public on Mar 16, 2016
Title pES10 h-G1 rep2
Sample type genomic
 
Source name Haploid pES10 cells in G1 (1c) rep2
Organism Homo sapiens
Characteristics cell line: h-pES10
cell type: Haploid pES10 cells
cell cycle phase: G1 (1c)
passage: 19
differentiation status: Undifferentiated
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was isolated (NucleoSpin Tissue Kit, MACHEREY-NAGEL) and bisulfite converted (EZ DNA Methylation Kit, Zymo Research) according to the manufacturer's protocol
Label Cy5 and Cy3
Label protocol Standard Illumina protocol
 
Hybridization protocol Standard Illumina protocol
Scan protocol HumanMethylation450 BeadChips were scanned with Illumina's iScan System
Description 100973330114_R02C01
Data processing IDAT files were processed and normalized by subset-quantile within array normalization (SWAN) and adjusted for batch effects using the R package ChAMP (version 1.4.0)
 
Submission date Jul 28, 2015
Last update date Mar 16, 2016
Contact name Ido Sagi
Organization name The Hebrew University of Jerusalem
Department Genetics
Lab Nissim Benvenisty Lab, The Azrieli Center for Stem Cells and Genetic Research
Street address Givat Ram
City Jerusalem
ZIP/Postal code 91904
Country Israel
 
Platform ID GPL13534
Series (2)
GSE71457 Derivation and differentiation of haploid human embryonic stem cells [methylation array]
GSE71458 Derivation and differentiation of haploid human embryonic stem cells

Data table header descriptions
ID_REF
VALUE SWAN Normalized Average Beta
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
cg01707559 0.215236986 0
cg02004872 0.104062166 0
cg02494853 0.033008522 0
cg03706273 0.018923713 0
cg04023335 0.196785466 0
cg04689676 0.175784111 0
cg04964672 0.490949268 0
cg05213048 0.882205752 0
cg13851368 0.094734272 0
cg15295597 0.081859358 0
cg26520468 0.886034416 0
cg27539833 0.923975639 0
cg00008945 0.052568459 0
cg00011200 0.043679085 0
cg00011891 0.058580147 0
cg00014152 0.851835424 0
cg00016522 0.187562046 0
cg00016934 0.119879835 0
cg00018261 0.06322414 0
cg00021786 0.946137229 0

Total number of rows: 474579

Table truncated, full table size 11555 Kbytes.




Supplementary file Size Download File type/resource
GSM1835027_100973330114_R02C01_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1835027_100973330114_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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