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Sample GSM1830655 Query DataSets for GSM1830655
Status Public on Jul 23, 2015
Title WB_statin_pt_137
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 59
Sex: M
smoking status: Current smoker
fev1% predicted: 54.9
fev1/fvc: 50.76
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.350419688
7892504 9.145875535
7892507 7.036051584
7892508 7.729604276
7892509 9.611367335
7892510 6.874439917
7892514 9.9041829
7892515 10.10930921
7892516 5.618193302
7892517 8.392496256
7892520 9.523085889
7892521 9.384750362
7892527 8.596640623
7892530 8.830843032
7892531 8.247828707
7892533 6.842232632
7892534 7.451121601
7892535 6.154443804
7892536 11.33895757
7892538 7.222268484

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830655_S940.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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