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Sample GSM1830646 Query DataSets for GSM1830646
Status Public on Jul 23, 2015
Title WB_statin_pt_135
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 60
Sex: M
smoking status: Former smoker
fev1% predicted: 75.2
fev1/fvc: 48.13
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.512362127
7892504 9.584034043
7892507 6.812140686
7892508 7.593780275
7892509 8.741303915
7892510 7.162551444
7892514 10.27975133
7892515 10.5378338
7892516 5.319510698
7892517 7.932847846
7892520 10.00487207
7892521 9.110052929
7892527 8.122703898
7892530 8.641604829
7892531 8.161370447
7892533 7.227282106
7892534 7.456336613
7892535 7.484208966
7892536 11.3550941
7892538 7.664358808

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830646_S418.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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