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Sample GSM1830644 Query DataSets for GSM1830644
Status Public on Jul 23, 2015
Title WB_non-statin_pt_354
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 82.5
fev1/fvc: 59.12
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.583259898
7892504 9.20713875
7892507 7.025510794
7892508 7.398903846
7892509 8.906587835
7892510 7.201047713
7892514 9.88827827
7892515 10.13563941
7892516 5.647787607
7892517 8.291668495
7892520 9.518171499
7892521 9.356787655
7892527 8.418763252
7892530 8.508487644
7892531 7.970941237
7892533 6.926055774
7892534 7.503041478
7892535 7.836616987
7892536 11.3363147
7892538 7.325815404

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830644_S734.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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