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Sample GSM1830634 Query DataSets for GSM1830634
Status Public on Jul 23, 2015
Title WB_non-statin_pt_345
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 72
Sex: M
smoking status: Current smoker
fev1% predicted: 41
fev1/fvc: 37.72
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.603678947
7892504 9.345612869
7892507 6.497972551
7892508 7.796033151
7892509 8.822648561
7892510 6.492596268
7892514 9.875806074
7892515 10.63523054
7892516 5.621651672
7892517 8.525756172
7892520 9.736356652
7892521 9.645064669
7892527 8.684788412
7892530 9.112849496
7892531 8.312944991
7892533 6.986249054
7892534 8.067215684
7892535 6.53121011
7892536 10.86501149
7892538 7.365454032

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830634_S321.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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