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Sample GSM1830626 Query DataSets for GSM1830626
Status Public on Jul 23, 2015
Title WB_statin_pt_129
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 65
Sex: M
smoking status: Current smoker
fev1% predicted: 56.7
fev1/fvc: 36.38
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.660112312
7892504 9.035988902
7892507 7.076279542
7892508 7.534298001
7892509 9.390145223
7892510 6.56667667
7892514 9.93569429
7892515 9.907809857
7892516 5.766271091
7892517 8.464435442
7892520 9.12930549
7892521 9.423648297
7892527 8.260652655
7892530 8.57369055
7892531 8.166950626
7892533 6.830199931
7892534 6.672374581
7892535 8.021508856
7892536 11.54341694
7892538 7.050734477

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830626_S376.CEL.gz 4.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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