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Sample GSM1830624 Query DataSets for GSM1830624
Status Public on Jul 23, 2015
Title WB_non-statin_pt_340
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 70
Sex: M
smoking status: Former smoker
fev1% predicted: 57
fev1/fvc: 34.52
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.713214602
7892504 8.883077982
7892507 7.397018999
7892508 7.515988172
7892509 8.735421376
7892510 6.178020429
7892514 10.03141743
7892515 9.970022661
7892516 5.738415707
7892517 8.425055122
7892520 9.282681979
7892521 9.599799457
7892527 8.226746805
7892530 8.009996095
7892531 8.195156417
7892533 6.842918964
7892534 7.620067219
7892535 8.091796219
7892536 11.1388552
7892538 7.291560948

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830624_S874.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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