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Sample GSM1830623 Query DataSets for GSM1830623
Status Public on Jul 23, 2015
Title WB_statin_pt_128
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 62
Sex: F
smoking status: Current smoker
fev1% predicted: 44.2
fev1/fvc: 48.03
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.547255074
7892504 9.292867452
7892507 7.035070504
7892508 6.688453538
7892509 8.965763666
7892510 6.184948969
7892514 10.00898006
7892515 9.967443763
7892516 5.691045202
7892517 7.688916758
7892520 9.221110182
7892521 9.103516581
7892527 8.173432774
7892530 8.042980412
7892531 8.240682723
7892533 6.867863213
7892534 7.258293466
7892535 8.225261024
7892536 10.94329507
7892538 7.066138219

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830623_S424.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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