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Sample GSM1830615 Query DataSets for GSM1830615
Status Public on Jul 23, 2015
Title WB_non-statin_pt_336
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 60
Sex: F
smoking status: Former smoker
fev1% predicted: 51.7
fev1/fvc: 42.45
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.432773782
7892504 8.810186299
7892507 7.463563253
7892508 7.815334649
7892509 9.076053637
7892510 7.54238817
7892514 10.04971047
7892515 9.525647925
7892516 5.675053733
7892517 8.645667514
7892520 9.468125922
7892521 9.382693521
7892527 8.512633251
7892530 8.648691036
7892531 8.449804193
7892533 7.005008387
7892534 7.638728856
7892535 7.240792627
7892536 11.12260306
7892538 7.071492783

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830615_S398.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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