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Sample GSM1830614 Query DataSets for GSM1830614
Status Public on Jul 23, 2015
Title WB_non-statin_pt_335
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 62
Sex: M
smoking status: Former smoker
fev1% predicted: 54.6
fev1/fvc: 40.12
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.072656564
7892504 8.565000098
7892507 7.28114821
7892508 7.322298489
7892509 8.833736561
7892510 6.185753764
7892514 9.344777647
7892515 9.945424252
7892516 5.457107897
7892517 8.324256333
7892520 9.064780855
7892521 9.850457223
7892527 8.134304725
7892530 8.713817386
7892531 7.938528432
7892533 6.617861911
7892534 7.254451093
7892535 7.207914111
7892536 10.5522213
7892538 6.192766432

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830614_S870.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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