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Sample GSM1830606 Query DataSets for GSM1830606
Status Public on Jul 23, 2015
Title WB_statin_pt_120
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 67
Sex: F
smoking status: Former smoker
fev1% predicted: 23.1
fev1/fvc: 28.83
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.720728112
7892504 9.190168589
7892507 7.145009298
7892508 7.62675674
7892509 9.361168769
7892510 6.544237315
7892514 9.357634865
7892515 10.14884598
7892516 5.739387851
7892517 8.67502386
7892520 9.453411309
7892521 9.66776676
7892527 8.597876928
7892530 8.878584942
7892531 8.40367189
7892533 6.880523046
7892534 8.294715954
7892535 7.42859983
7892536 11.31772445
7892538 7.072405966

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830606_S479.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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