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Sample GSM1830604 Query DataSets for GSM1830604
Status Public on Jul 23, 2015
Title WB_non-statin_pt_329
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 66
Sex: M
smoking status: Former smoker
fev1% predicted: 33.6
fev1/fvc: 33.27
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.409796735
7892504 9.403720008
7892507 6.727437875
7892508 7.568970448
7892509 8.909884551
7892510 7.602948021
7892514 9.958191461
7892515 10.32055311
7892516 5.566470594
7892517 8.363198502
7892520 9.295858969
7892521 9.47840258
7892527 8.334457075
7892530 8.914297797
7892531 8.331362351
7892533 7.289453014
7892534 7.409986604
7892535 6.575705968
7892536 11.1272454
7892538 7.115784324

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830604_S511.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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