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Sample GSM1830603 Query DataSets for GSM1830603
Status Public on Jul 23, 2015
Title WB_non-statin_pt_328
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 72
Sex: M
smoking status: Former smoker
fev1% predicted: 71.5
fev1/fvc: 51.64
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.832386963
7892504 9.350380217
7892507 7.006799032
7892508 7.443874198
7892509 8.918062199
7892510 6.992644617
7892514 9.877539435
7892515 10.22503935
7892516 5.751749073
7892517 8.957927436
7892520 9.275284421
7892521 9.587335896
7892527 8.212342893
7892530 8.750458817
7892531 8.459276272
7892533 6.902632981
7892534 7.619025293
7892535 6.739210563
7892536 10.57676522
7892538 7.107802117

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830603_S924.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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