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Sample GSM1830596 Query DataSets for GSM1830596
Status Public on Jul 23, 2015
Title WB_non-statin_pt_321
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 64
Sex: F
smoking status: Former smoker
fev1% predicted: 69.6
fev1/fvc: 58.35
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.463343802
7892504 9.517324281
7892507 6.790588354
7892508 7.473532226
7892509 9.349652328
7892510 5.583865859
7892514 9.660727137
7892515 10.37796184
7892516 5.69100131
7892517 8.352451261
7892520 9.703107873
7892521 9.557993251
7892527 8.259128626
7892530 8.513209679
7892531 8.045529094
7892533 7.226884224
7892534 7.422882081
7892535 7.995506824
7892536 11.56946109
7892538 7.157682006

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830596_S809.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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