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Sample GSM1830594 Query DataSets for GSM1830594
Status Public on Jul 23, 2015
Title WB_non-statin_pt_320
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 59
Sex: M
smoking status: Former smoker
fev1% predicted: 33.4
fev1/fvc: 27.72
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.499082564
7892504 9.265174481
7892507 6.875768764
7892508 6.877277143
7892509 8.936248175
7892510 6.447699619
7892514 9.691556442
7892515 10.04702109
7892516 5.608087843
7892517 8.197092456
7892520 9.358597508
7892521 9.7535285
7892527 8.388164424
7892530 9.021029152
7892531 8.264622672
7892533 6.987398594
7892534 7.090462974
7892535 6.535302743
7892536 11.18602733
7892538 7.197036337

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830594_S577.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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