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Sample GSM1830590 Query DataSets for GSM1830590
Status Public on Jul 23, 2015
Title WB_non-statin_pt_318
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 62
Sex: F
smoking status: Former smoker
fev1% predicted: 69.8
fev1/fvc: 58.39
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.52999168
7892504 9.255667224
7892507 7.067707475
7892508 7.313359648
7892509 9.303511918
7892510 6.526640566
7892514 9.976671552
7892515 9.730282903
7892516 5.691590142
7892517 8.171857103
7892520 9.016763936
7892521 9.4869828
7892527 8.140029408
7892530 8.500691726
7892531 8.101912613
7892533 7.154867737
7892534 7.457775735
7892535 8.123126038
7892536 11.37561845
7892538 6.496630361

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830590_S170.CEL.gz 4.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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