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Sample GSM1830587 Query DataSets for GSM1830587
Status Public on Jul 23, 2015
Title WB_non-statin_pt_315
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 73
Sex: M
smoking status: Current smoker
fev1% predicted: 36.4
fev1/fvc: 32.77
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.488801485
7892504 9.23701351
7892507 7.214247859
7892508 7.475100326
7892509 8.959890004
7892510 6.529706061
7892514 10.00526304
7892515 10.22820983
7892516 5.660454205
7892517 8.196169126
7892520 9.464567526
7892521 9.379181535
7892527 8.141859754
7892530 8.543647518
7892531 8.31486159
7892533 7.11205125
7892534 7.010766871
7892535 7.424300742
7892536 11.29256006
7892538 7.02821311

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830587_S888.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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