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Sample GSM1830586 Query DataSets for GSM1830586
Status Public on Jul 23, 2015
Title WB_non-statin_pt_314
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 59
Sex: M
smoking status: Current smoker
fev1% predicted: 60.9
fev1/fvc: 56.54
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.528758637
7892504 8.920404571
7892507 6.622247636
7892508 7.420439843
7892509 9.133328978
7892510 6.596494826
7892514 9.959472245
7892515 10.04005429
7892516 5.666424847
7892517 8.597304923
7892520 9.128523172
7892521 9.47091507
7892527 8.3017357
7892530 8.691331124
7892531 8.457744237
7892533 6.796560306
7892534 7.719040586
7892535 7.555048274
7892536 10.85202526
7892538 7.004109908

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830586_S299.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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