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Sample GSM1830584 Query DataSets for GSM1830584
Status Public on Jul 23, 2015
Title WB_non-statin_pt_312
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 62
Sex: F
smoking status: Current smoker
fev1% predicted: 37.4
fev1/fvc: 56.71
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.396559815
7892504 9.413466345
7892507 7.02960346
7892508 7.689097569
7892509 7.718853698
7892510 5.470532969
7892514 10.06092301
7892515 10.59699852
7892516 5.637188279
7892517 8.204036754
7892520 9.637354706
7892521 8.921149272
7892527 8.528264642
7892530 8.511558723
7892531 8.232059589
7892533 7.174956003
7892534 6.813211575
7892535 7.442280846
7892536 11.38216911
7892538 7.204899376

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830584_S554.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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