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Sample GSM1830570 Query DataSets for GSM1830570
Status Public on Jul 23, 2015
Title WB_non-statin_pt_301
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 52
Sex: M
smoking status: Former smoker
fev1% predicted: 32
fev1/fvc: 33.13
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.386234905
7892504 9.785206615
7892507 6.68691379
7892508 6.114232944
7892509 8.899220993
7892510 7.169682624
7892514 10.16748133
7892515 10.69145297
7892516 5.779146604
7892517 8.328721686
7892520 10.11861411
7892521 9.04315407
7892527 8.429518657
7892530 8.535433535
7892531 8.125256052
7892533 7.264753961
7892534 6.671161967
7892535 8.03002152
7892536 11.50654956
7892538 7.017636187

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830570_S703.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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