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Sample GSM1830564 Query DataSets for GSM1830564
Status Public on Jul 23, 2015
Title WB_non-statin_pt_296
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 67
Sex: F
smoking status: Former smoker
fev1% predicted: 49.5
fev1/fvc: 39.35
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.51505794
7892504 9.366035011
7892507 6.552129139
7892508 7.568470369
7892509 9.32292561
7892510 6.614681155
7892514 9.422037165
7892515 10.30980053
7892516 5.68711747
7892517 8.788057639
7892520 9.428125701
7892521 9.437352028
7892527 8.245994616
7892530 8.743287976
7892531 8.230086209
7892533 6.916565021
7892534 7.412824063
7892535 7.466220965
7892536 10.97228084
7892538 7.123079328

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830564_S347.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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