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Sample GSM1830546 Query DataSets for GSM1830546
Status Public on Jul 23, 2015
Title WB_non-statin_pt_280
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 50
Sex: M
smoking status: Current smoker
fev1% predicted: 50.4
fev1/fvc: 36.22
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.781462496
7892504 9.942872626
7892507 6.907300431
7892508 7.515236404
7892509 10.96388059
7892510 6.457710415
7892514 9.980155992
7892515 10.34024352
7892516 5.655719995
7892517 8.3448988
7892520 9.208601485
7892521 9.434284475
7892527 8.261128501
7892530 8.57022717
7892531 8.430632315
7892533 7.214415493
7892534 6.9986425
7892535 7.316173463
7892536 11.64147476
7892538 7.121433724

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830546_S784.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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