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Sample GSM1830544 Query DataSets for GSM1830544
Status Public on Jul 23, 2015
Title WB_non-statin_pt_278
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 58
Sex: M
smoking status: Current smoker
fev1% predicted: 58.8
fev1/fvc: 62.21
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.741564496
7892504 9.011690445
7892507 6.931796834
7892508 7.621852493
7892509 9.014008224
7892510 6.771068776
7892514 10.16728917
7892515 10.00188879
7892516 5.846820712
7892517 8.405869932
7892520 9.239721733
7892521 9.532871102
7892527 8.416538514
7892530 8.742582667
7892531 8.56555504
7892533 6.814710729
7892534 7.695953148
7892535 6.72711141
7892536 11.4283077
7892538 6.736181738

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830544_S295.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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