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Sample GSM1830525 Query DataSets for GSM1830525
Status Public on Jul 23, 2015
Title WB_statin_pt_105
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 66
Sex: F
smoking status: Current smoker
fev1% predicted: 65.8
fev1/fvc: 44.76
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.493301486
7892504 9.408074328
7892507 6.544435531
7892508 7.325785538
7892509 9.121807367
7892510 6.387766756
7892514 9.386633436
7892515 10.38212086
7892516 4.524779833
7892517 8.373272701
7892520 9.015426846
7892521 9.352599244
7892527 7.613058394
7892530 8.651416249
7892531 7.84954338
7892533 7.037826624
7892534 7.400245677
7892535 7.792711281
7892536 11.1579809
7892538 7.180802351

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830525_S460.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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