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Sample GSM1830521 Query DataSets for GSM1830521
Status Public on Jul 23, 2015
Title WB_statin_pt_103
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 73
Sex: M
smoking status: Former smoker
fev1% predicted: 23.4
fev1/fvc: 25.78
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.320336496
7892504 9.386053855
7892507 6.681512551
7892508 7.509216806
7892509 8.870502444
7892510 6.425946685
7892514 9.800447124
7892515 10.46336151
7892516 5.661700168
7892517 8.309068357
7892520 9.537311371
7892521 9.563391049
7892527 8.09835374
7892530 8.51427763
7892531 8.370095133
7892533 7.146492112
7892534 7.330908302
7892535 7.961086072
7892536 10.82323683
7892538 7.122591174

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830521_S622.CEL.gz 4.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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