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Sample GSM1830520 Query DataSets for GSM1830520
Status Public on Jul 23, 2015
Title WB_statin_pt_102
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): Y
disease: COPD
age: 68
Sex: M
smoking status: Current smoker
fev1% predicted: 36.4
fev1/fvc: 33.15
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.687324078
7892504 9.289965284
7892507 7.117095233
7892508 7.651590039
7892509 9.325514141
7892510 6.540132798
7892514 9.874799834
7892515 10.02463148
7892516 5.74505738
7892517 8.769547002
7892520 9.217887929
7892521 9.578824758
7892527 8.555902486
7892530 8.55749335
7892531 8.601740099
7892533 6.942425234
7892534 7.847969109
7892535 7.432315374
7892536 11.38246252
7892538 6.903437509

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830520_S133.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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