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Sample GSM1830518 Query DataSets for GSM1830518
Status Public on Jul 23, 2015
Title WB_non-statin_pt_261
Sample type RNA
 
Source name PAXgene whole blood mRNA
Organism Homo sapiens
Characteristics statin user (y/n): N
disease: COPD
age: 68
Sex: F
smoking status: Former smoker
fev1% predicted: 57.1
fev1/fvc: 44.52
Extracted molecule total RNA
Extraction protocol Qiagen PAXgene Blood miRNA Kit (Cat# 763134), automated processing using the Qiagen QIAcube robotic workstation (Cat# 9001292). Protocol to amplify RNA-Ambion WT Expression RNA Amplification Kit (Part# 4440536)
Label biotin
Label protocol Affymetrix GeneChip HT WT Terminal Labeling Kit (Part# 901648)
 
Hybridization protocol Affymetrix GeneTitan Hybridization, Wash and Stain Kit for WT Array Plates (Part# 901622)
Scan protocol Affymetrix GeneChip Command Console (AGCC) version 4.1.2.1567G for scanning, image acquisition and image processing on the Affymetrix GeneTitan Multi-Channel(MC) Instrument.
Data processing RMA normalization with Farms bioconductor package to filter out non-informative probe sets
 
Submission date Jul 22, 2015
Last update date Aug 16, 2016
Contact name Bruce Maxwell McManus
E-mail(s) Bruce.McManus@hli.ubc.ca
Phone 604-806-8586
Organization name PROOF Centre of Excellence
Department UBC James Hogg Research Centre
Street address 1081 Burrard Street
City Vancouver
State/province BC
ZIP/Postal code V6Z 1Y6
Country Canada
 
Platform ID GPL11532
Series (1)
GSE71220 The effect of statins on blood gene expression in COPD

Data table header descriptions
ID_REF
VALUE log2 RMA (expression value)

Data table
ID_REF VALUE
7892501 4.473342366
7892504 9.797463085
7892507 6.466866558
7892508 7.304003413
7892509 8.681506098
7892510 5.872895949
7892514 9.918379683
7892515 10.68466272
7892516 5.653727463
7892517 8.168426197
7892520 9.658676595
7892521 9.612797233
7892527 8.40356417
7892530 8.579894182
7892531 8.260989615
7892533 7.546034907
7892534 6.095488124
7892535 7.960228713
7892536 11.19610503
7892538 7.236256814

Total number of rows: 12381

Table truncated, full table size 240 Kbytes.




Supplementary file Size Download File type/resource
GSM1830518_S702.CEL.gz 4.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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